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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CH.1.1.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CA.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BS.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.75.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.28 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.272NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.371NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.353NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.407NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AA.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.182NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used