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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CL.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CL.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.132 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.83NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCSNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CR.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KB.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XANNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EU.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used