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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FL.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.20.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.110NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.89NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HP.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.105NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.103NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HC.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.94NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDD.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KR.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.64.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDP.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KR.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KZ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KS.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDSNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LY.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used