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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.254NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.36.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.122.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.79 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.209NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.236NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.395NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.120.2.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.416.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.532NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.408NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XHNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDYNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.18.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MM.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.48.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.4.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LP.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.50.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.81NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBL.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.28.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used