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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HA.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.351 (Beta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HZ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.19.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.100NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EU.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.48NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EK.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.66NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GS.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.21.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.37NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EE.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ES.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.19.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.479NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.437NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.371NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.4.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HU.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.625NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.507NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.178NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.273NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.211NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.474NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.297NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used