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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
JN.11.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XDLNCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
JN.17NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.29.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.29.2 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BC.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.10.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.3.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.3.13NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.3.9NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.10.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.56NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.29NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.10NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.112NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.123NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.143NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.29NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XBB.1.48NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.46.6.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.360NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.347NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.321NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.379NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.78NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.16NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.231NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.49NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.67NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.190NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.120NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AM.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AA.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.249NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AA.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.505NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.406NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.115NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.29NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AA.8NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.133NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.18NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.466NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.489NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.363NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.95NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.26NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.531NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.45NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.200NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used