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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.450NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.130NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AW.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.268NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.344NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.103NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.485NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.119NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.276NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.111NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.27NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.19NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.336NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.400.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.24.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.492NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.487NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.118NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.357NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BP.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.46NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.3.21NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.6NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.530NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.1.17.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.75.8NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
CH.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.633NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
DD.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.136NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XAYNCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
DJ.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XAENCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.467NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.484NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.476NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.19NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.18NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.404NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
CV.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
DJ.1.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BQ.1.1.73NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
DW.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BR.5.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
BA.2.75.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
XAKNCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.42.1 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.348NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.428.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.459NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used