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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.176NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.3.4 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.391NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.393NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.432NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.388NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
P.6NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.48NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.112NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.370NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.118NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.137NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.309NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.632NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.72NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.108NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.332NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.109NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.361NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.177.38NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.417NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AM.1NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.258.20NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.36.37NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.319NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.182NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.430NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.331NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
AY.112.3 (Delta)NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.37NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
N.7NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.515NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.287NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.431NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
C.12NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.170NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.23NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.506NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.6.8NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.438.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.1.27NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.30NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.188NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.50NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.494NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.165NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.554NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
B.1.243.2NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
A.2.5.3NCorman-NGAGGAACGAGAAGAGGCTTG20552883328814R-22527.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used