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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.476EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.19EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.18EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.404EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.42.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.348EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.428.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AJ.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.459EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.29EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.415.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.243.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.98EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.566EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.480EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.579EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
N.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
P.1.11 (Gamma)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.435EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.445EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.124EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.384EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.569EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.524EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.596.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.473EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.595.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.424EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.64EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AH.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.327EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.396EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.129EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AK.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.20EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.221.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.224EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.14EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.618EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.458EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.17EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.258.22EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AG.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.258.16EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
W.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.264.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.20EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.19EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.12EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used