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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.436EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.558EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.518EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.368EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.404EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.306EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.328EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.533EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.507EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.54EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.196EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.57EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.34EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.459EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.117EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.381EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.237EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.382EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.395EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.37EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.61EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.40EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.153EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.33EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.62EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.391EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.448EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Q.1 (Alpha)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.46 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.99 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.322EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.416EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.239EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.375EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.432EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.241EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.298EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.433EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.39EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.561EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.605EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.29EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.596EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
W.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used