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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.441NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.509NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.293NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.225NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.637NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.26 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.103 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LP.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.3.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.65.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDVNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KS.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.4.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.7.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.42.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.48.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LF.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LB.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.64NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.44NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.29.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.24.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.18.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LU.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used