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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.56NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.49NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDDNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.2 (Zeta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.499NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.212NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.41.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.4.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JF.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JG.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.62NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FU.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBL.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used