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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.70NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.559NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.406NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.69NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ER.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.6 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.9 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XUNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.3 (Omicron)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.16.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.372NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCKNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HH.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.7.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.7.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GS.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used