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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAGNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.9.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.17NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DJ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.16NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.11.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.37NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAY.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FH.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CJ.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used