Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.22ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
XBB.1.5.22ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
XBB.1.5.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.22EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.1.5.22EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EN.1ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
EN.1ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
EN.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EN.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
EN.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.14ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
XBB.2.3.14ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
XBB.2.3.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
XBB.2.3.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.14EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.2.3.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
FL.13ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
FL.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.13EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.8ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
DV.8ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
DV.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
DV.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DV.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EY.1ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
EY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EY.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
EY.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.35ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
XBB.1.35ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used