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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.4.11 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.4ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.4ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.34.2 (Delta)ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
AY.34.2 (Delta)ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
AY.34.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10681.4South Korea
AY.34.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.2 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.34.2 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.34.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.34.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.50ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.50ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.50SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.50EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.50EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.50NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.60ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.60ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.60EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.60EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.52ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.52ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.52SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.52EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.52EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.52NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
W.3ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
W.3ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
W.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
W.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
W.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
W.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.250ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used