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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.155ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.155ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.155SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.155SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.155EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.155EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.155NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.155NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.92ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-2052.38South Korea
B.1.1.92ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.92SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.92SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.92EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.92EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.92NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.92NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.145ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.145ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.145SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.145SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.145EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.145EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.145NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.145NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.120ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.120ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.120SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.120SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.120EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.120EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.120NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.120NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.77ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.77ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.77SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.77EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.77EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.361ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.361ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.361SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.361SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.361EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.361EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.361NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.361NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.38ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.177.38ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-16402.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used