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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.274ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.274ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.274SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.274EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.274EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
B.1.274NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.274NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.515ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.515ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.515SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.515SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.515EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.515EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.515NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.515NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.258.23ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-2052.38South Korea
B.1.258.23ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.258.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.258.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.258.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.370ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.370ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.370SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.370SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.370EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.370EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.370NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.370NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.118ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.118ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.118SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.118SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.118EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.118EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.118NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.118NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.137ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.137ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.137SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.137SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.137EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.137EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.137NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.137NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.309ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.309ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used