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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.203EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.203NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.203NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.157ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.157ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.157SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.157SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.157EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.157EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.157NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.157NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.176ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.176ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.1.176SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.176SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.176EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.176EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.176NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.176NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.3.4 (Delta)ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-19758.2South Korea
AY.3.4 (Delta)ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
AY.3.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.3.4 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.3.4 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.3.4 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.3.4 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.391ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.1.391ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-11558.6South Korea
B.1.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.391SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.391EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-1649.2South Korea
B.1.1.391EWon-ECACACAATCGATGCGCAGTA20502636526346R-2361.24South Korea
B.1.1.391NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.391NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.393ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-22753.7South Korea
B.1.393ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.393SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.393SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.393EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.393EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.393NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.393NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.432ORF1abWon-ORF1abCATGTGTGGCGGTTCACTAT20501544115460F-20058.6South Korea
B.1.432ORF1abWon-ORF1abTGCATTAACATTGGCCGTGA20451555815539R-21175.8South Korea
B.1.432SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.432SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.432EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.432EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.432NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used